Biochemistry and Chemical Biology

At Ohio State, biochemistry and chemical biology research covers important topics from understanding fundamental life processes to developing agents to improve human health.  Broad areas include molecular biology, structure-function studies of biomolecules, enzymology, nucleic acid biochemistry, development of peptide and small molecule probes, protein structure and folding including X-ray crystallography and NMR, and protein engineering. Many members of the department work in interdisciplinary areas between biology and other areas of chemistry (bioanalytical, bioinorganic, bioorganic, biophysical).

Resources

The Campus Chemical Instrument Center (CCIC) has world-class shared resources in high-field NMR, mass spectrometry, proteomics, and X-ray crystallography. The department's Biophysical Interaction and Characterization Facility (BICF) has analytical ultracentrifugation, CD spectroscopy, fluorescence, and calorimetry.  The department also has excellent shared small-molecule NMR and mass spectrometry instrumentation.

Students in the Biochemistry division are eligible for the NIH T32 Molecular Biophysics Training Program (MBTP), and many labs interact with the outstanding nucleic acids community at OSU through the Center for RNA Biology.

In addition to the Chemistry Ph.D. program, students with more biological interests should consider the Ohio State Biochemistry Program (OSBP), and students with more physical interests should consider the Biophysics Graduate Program.

Research Areas

  • Bioinorganic chemistry
  • Chemical biology
  • Computational biology
  • Drug design and delivery
  • Enzymes
  • Laser spectroscopy
  • Mass spectrometry and proteomics
  • Metabolomics
  • Molecular biology
  • Molecular biophysics
  • NMR spectroscopy
  • Nucleic acids (chromatin & DNA, RNA)
  • Protein structure and folding
  • Proteomics
  • Structural biology
  • X-ray crystallography

 

Faculty

Photograph of Dr. Vladislav Belyy

Vladislav Belyy

Our group studies the mechanisms of signaling across biological membranes. We are particularly interested in the oligomerization of stress receptors, which we investigate with a combination of optogenetics, advanced microscopy, and in vitro biochemistry.

  • Enzymes
  • Molecular Biology
  • Molecular Biophysics
  • Nucleic Acids (chromatin & DNA, RNA)

     

Dennis Bong

Dennis Bong

We design and synthesize polymer, peptide, lipid and nucleic acid constructs to  achieve controlled chemical delivery in vivo. Research efforts begin with chemistry and trace a path through biophysical, biochemical and cell culture studies.

  • Chemical Biology
  • Drug Delivery
  • Biomaterials

Rafael Bruschweiler

Rafael Bruschweiler

Our research program focuses on protein dynamics (enzymes, regulatory and intrinsically disordered proteins) in relationship to function using NMR and long

MD simulations. It also covers Metabolomics of complex biological samples to uncover the metabolic response to health and disease.

  • Molecular Biophysics & Structural Biology
  • NMR
  • Theory & Computation

Ross Dalbey

Ross Dalbey

My lab discovered YidC, which is essential for insertion of proteins into membranes in bacteria.  Our research is starting to use a range of biophysical approaches, i.e., fluorescence spectroscopy, sophisticated electron paramagnetic resonance spin labeling, and single molecule approaches to examine the dynamics and structural relationships of membrane insertion events. We are elucidating the functional interactions in the YidC/Sec holo-insertase complex with and without substrate.  Another objective is to identify the substrate features of multispanning membrane proteins that determine selection of YidC and SecYEG translocase pathways in E. coli.

  • Molecular Biology
  • Enzymes
  • Molecular Biophysics & Structural Biology

Mark Foster

Mark Foster

Protein and nucleic acid (DNA/RNA) structure and dynamics; gene regulation; allostery; DNA recombination; riboswitches; transcription; enzyme dynamics; oligomeric assemblies; NMR spectroscopy; calorimetry; modeling; drug discovery.

  • Molecular Biophysics & Structural Biology
  • NMR
  • RNA

Venkat Gopalan

Venkat Gopalan

(i) RNase P as a model system to uncover mechanisms of protein-aided RNA catalysis. (ii) Metabolism of Amadori compounds by Salmonella.

  • Molecular Biology
  • Enzymes
  • RNA

Amanda Hummon

Amanda Hummon

Mass spectrometry and proteomics.

  • Mass Spectrometry
  • Proteomics

 

Jane Jackman

Jane Jackman

The Jackman lab uses enzyme kinetics, model organism genetics, and RNA biochemistry to uncover the molecular mechanisms and biological functions of tRNA processing and modification enzymes that catalyze critical reactions in biology.

  • Molecular Biology
  • Enzymes
  • RNA

 

Christopher Jaroniec

Christopher Jaroniec

Development of multidimensional solid-state NMR methods and their  applications to structural and dynamic analysis of large biomacromolehummocular protein-protein and protein-DNA assemblies, including amyloids and chromatin.

  • Experimental Physical Chemistry & Spectroscopy
  • Molecular Biophysics & Structural Biology
  • NMR

Bern Kohler

Bern Kohler

Femtosecond spectroscopy of biomolecules and nanomaterials for solar energy conversion and photocatalysis; photoinduced proton-coupled electron transfer in molecular and nanoscale systems; exciton and carrier dynamics in earth-abundant metal oxides.

  • Experimental Physical Chemistry & Spectroscopy
  • Solar Energy Conversion
  • DNA & Chromatin

Dmitri Kudryashov

Dmitri Kudryashov

We investigate the role of the actin cytoskeleton in metastasis of human tumors and in immune response. Additionally, we study modes of toxicity of bacterial toxins and mechanisms employed by human immune peptides to intercept bacterial and viral infections.

  • Enzymes
  • Molecular Biophysics & Structural Biology
  • Molecular Basis of Disease

Steffen Lindert

Steffen Lindert

Simulations of biomolecules, computational protein structure prediction from sparse experimental data, and computer-aided drug discovery

  • Theory & Computation
  • Molecular Biophysics & Structural Biology
  • Protein Structure & Folding

Thomas Magliery

Thomas Magliery

Combinatorial and statistical approaches to protein stability, structure and function; protein folding; protein engineering; protein therapeutics

  • Molecular Biophysics & Structural Biology
  • Protein Structure & Folding
  • Chemical Biology

Karin Musier-Forsyth

Karin Musier-Forsyth

Structure and function of RNA-protein interactions critical for assembly of HIV-1 and other retroviruses; Quality control by aminoacyl-tRNA synthetases and related trans-editing enzymes.

  • Chemical Biology
  • RNA
  • Enzymes

Kotaro Nakanishi

Kotaro Nakanishi

Our goal is to understand the molecular mechanisms by which nucleic acids regulate basic cellular processes such as gene expression.

  • Molecular Biophysics & Structural Biology
  • RNA
  • Molecular Biology

Jennifer Ottesen

Jennifer Ottesen

Synthetic protein chemistry; expressed protein ligation; solid phase chemical ligation; histone post-translational modification; nucleosome structure and dynamics

  • Chemical Biology
  • Protein Structure & Folding
  • DNA & Chromatin

Dehua Pei

Dehua Pei

Discovery and delivery of macrocyclic compounds as chemical probes and therapeutics against protein-protein interactions; delivery of proteins and nucleic acids into mammalian cells

  • Chemical Biology
  • Bioorganic & Medicinal Chemistry
  • Biotechnology

Hannah Shafaat

Hannah Shafaat

Combining metalloprotein engineering, spectroscopy, inorganic chemistry, electro- and photochemistry, and computational methods to investigate mechanisms of bioinorganic systems with relevance to energy conversion and disease.

  • Bioinorganic Chemistry
  • Experimental Physical Chemistry & Spectroscopy
  • Enzymes

Marcos Sotomayor

Marcos Sotomayor

We use experimental and computational tools to discover structure-function relationships in macromolecular complexes involved in mechanotransduction and selective cellular adhesion.

  • Molecular Biophysics & Structural Biology
  • Theory & Computation
  • Neuroscience

Photograph of Dr. Damien Wilburn

Damien Wilburn

My lab studies the structural dynamics and molecular evolution of sperm-egg interactions in multiple animal models (humans, salamanders, abalone) using NMR, mass spectrometry proteomics, and other analytical methods to understand barriers to hybridization and drivers of human infertility.

  • Molecular Biophysics & Structural Biology
  • NMR
  • Proteomics

     

Justin Wu

Zhengrong (Justin) Wu

My research interests are mainly focused on using biochemical and biophysical techniques to investigate the structure and functional dynamics of biomolecules and their interaction which are important for their biological functions.

  • Molecular Biophysics & Structural Biology
  • Chemical Biology
  • Cancer

Vicki Wysocki

Vicki Wysocki

We develop surface-induced dissociation ion mobility/high resolution MS for large non-covalent protein and nucleoprotein complexes, define peptide fragment structures with IR action spectroscopy, and perform metabolomics and proteomics research.

  • Analytical Spectroscopy & Spectrometry
  • Mass Spectrometry
  • Molecular Biophysics & Structural Biology

Dongping Zhong

Dongping Zhong

Department of Physics

Femtobiology; biomolecular interactions; protein dynamics

  • Experimental Physical Chemistry & Spectroscopy
  • Molecular Biophysics & Structural Biology
  • Protein Structure & Folding